Basic Information
Locus ID:
CH05.352
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 2709242 | 2710573 | + | CH05.352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 46,062.72 Da | 54.65 | 102.10 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 53 | 3.69861E-22 | - |
| Pfam | PF04564 | U-box domain | 11 | 74 | 5.9E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 75 | 4.32E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 133 | 421 | 8.96E-7 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 86 | 5.4E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 10 | 73 | 4.3E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 80 | 34.800751 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 1.44E-60 |
| RefSeq | XP_034602614.1 | E3 ubiquitin-protein ligase PUB23-like [Setaria viridis] | 9.06E-232 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 1.4E-59 | |
| TrEMBL | A0A4U6TZZ0 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_7G307300v2 PE=4 SV=1 | 2.05E-230 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology