Basic Information
Locus ID:
CH05.3479
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 37452702 | 37467162 | - | CH05.3479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 331,875.34 Da | 51.16 | 72.75 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 291 | 315 | 4.67105E-5 | - |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1622 | 1687 | 1.3E-12 | IPR025312 |
| Pfam | PF13963 | Transposase-associated domain | 668 | 741 | 6.2E-18 | IPR029480 |
| Pfam | PF02992 | Transposase family tnp2 | 965 | 1178 | 4.8E-91 | IPR004242 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 9 | 47 | 1.2E-7 | IPR025287 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1362 | 1468 | 8.8E-38 | IPR025452 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 402 | 508 | 3.5E-15 | IPR001245 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2807 | 2901 | 4.91E-7 | IPR038765 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 382 | 508 | 2.85E-29 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 512 | 2.1E-30 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 246 | 323 | 1.1E-8 | - |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | 5.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 400 | 730 | 10.60546 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 406 | 428 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 291 | 314 | - | IPR018097 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1843 | 1913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1933 | 1980 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2037 | 2059 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1947 | 1963 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1898 | 1913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2567 | 2596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2694 | 2729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1848 | 1864 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2395 | 2418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2615 | 2663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1689 | 1710 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2037 | 2068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2548 | 2667 | - | - |
| Coils | Coil | Coil | 553 | 573 | - | - |
| Coils | Coil | Coil | 2353 | 2380 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21240.1 | wall associated kinase 3. encodes a wall-associated kinase | 3.22E-79 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q9LMN8 | Wall-associated receptor kinase 3 OS=Arabidopsis thaliana OX=3702 GN=WAK3 PE=2 SV=2 | 3.13E-78 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |