Basic Information
Locus ID:
CH05.3035
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 27672016 | 27676616 | + | CH05.3035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 45,188.33 Da | 53.68 | 63.84 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 126 | 297 | 8.8E-80 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 222 | 295 | 1.3E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 119 | 220 | 2.3E-43 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.3 | ubiquitin fusion degradation 1. | 3.82E-143 |
| RefSeq | XP_004951680.1 | ubiquitin fusion degradation protein 1 homolog [Setaria italica] | 8.49E-222 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 3.44E-72 | |
| TrEMBL | A0A3L6RXH1 | Ubiquitin fusion degradation protein 1 homolog OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00900 PE=3 SV=1 | 1.06E-212 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology