Basic Information
Locus ID:
CH05.2898
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 25480189 | 25480779 | - | CH05.2898 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 20,428.60 Da | 51.65 | 84.75 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 123 | 166 | 3.24325E-17 | - |
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 5.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 172 | 2.4E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 171 | 1.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 165 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 166 | 12.504031 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 6.06E-19 |
| RefSeq | XP_025808471.1 | RING-H2 finger protein ATL3-like [Panicum hallii] | 4.19E-78 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 5.97E-18 | |
| TrEMBL | A0A3L6T1L1 | E3 ubiquitin-protein ligase EL5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM05G22850 PE=4 SV=1 | 2.5E-77 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology