Basic Information
Locus ID:
CH05.2894
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 25367158 | 25367730 | - | CH05.2894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 19,666.13 Da | 56.69 | 85.42 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 122 | 165 | 3.81241E-17 | - |
| Pfam | PF13639 | Ring finger domain | 122 | 165 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 171 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 170 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 123 | 164 | 4.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 165 | 12.164712 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 3.42E-17 |
| RefSeq | XP_034584762.1 | E3 ubiquitin-protein ligase EL5-like [Setaria viridis] | 4.64E-71 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 3.37E-16 | |
| TrEMBL | A0A3L6R6H2 | Putative RING zinc finger domain superfamily protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G24300 PE=4 SV=1 | 3.14E-73 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology