Basic Information
Locus ID:
CH05.2419
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 20088766 | 20091198 | - | CH05.2419 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 26,630.80 Da | 47.63 | 62.05 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 125 | 176 | 3.81308E-12 | - |
| Pfam | PF12906 | RING-variant domain | 125 | 176 | 1.4E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 179 | 1.09E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 185 | 3.0E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 124 | 177 | 1.7E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 117 | 183 | 18.970182 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 8.51E-53 |
| RefSeq | XP_004961898.1 | uncharacterized protein LOC101769852 [Setaria italica] | 2.84E-160 |
| TrEMBL | A0A1E5WFS8 | RING-CH-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0002971 PE=4 SV=1 | 5.98E-159 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology