Basic Information
Locus ID:
CH05.2298
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 18883834 | 18886140 | - | CH05.2298 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 65,266.83 Da | 32.81 | 91.05 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 52 | 213 | 1.87592E-91 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 411 | 593 | 1.13672E-89 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 246 | 362 | 3.5E-20 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 49 | 216 | 1.7E-34 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 456 | 581 | 5.0E-15 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 49 | 221 | 1.06E-43 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 241 | 386 | 3.02E-30 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 411 | 605 | 1.5E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 235 | 398 | 1.1E-39 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 46 | 222 | 1.1E-59 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 405 | 595 | 8.5E-58 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 43 | 605 | 6.2E-218 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_004961783.1 | pyruvate decarboxylase 1 [Setaria italica] | 0 |
| P28516 | Pyruvate decarboxylase 1 OS=Zea mays OX=4577 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | K3Z4P2 | pyruvate decarboxylase OS=Setaria italica OX=4555 GN=101757538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology