Basic Information
Locus ID:
CH05.2292
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 18833017 | 18836916 | + | CH05.2292 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 71,105.77 Da | 53.34 | 91.53 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 353 | 432 | 1.4E-9 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 5.7E-12 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 471 | 606 | 1.81E-12 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 175 | 2.65E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 325 | 432 | 2.82E-15 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 202 | 5.6E-39 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 465 | 614 | 4.8E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 313 | 444 | 3.0E-18 | - |
| SMART | SM00219 | tyrkin_6 | 311 | 608 | 3.2E-4 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 611 | 11.368696 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 240 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45840.2 | Leucine-rich repeat protein kinase family protein. | 9.68E-70 |
| RefSeq | XP_034588005.1 | protein MALE DISCOVERER 1-like isoform X2 [Setaria viridis] | 1.16E-250 |
| C0LGQ4 | Protein MALE DISCOVERER 2 OS=Arabidopsis thaliana OX=3702 GN=MDIS2 PE=1 SV=1 | 1.54E-66 | |
| TrEMBL | A0A4U6VBL0 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G214400v2 PE=4 SV=1 | 2.62E-249 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.2078, BH05.2211, CH05.2292 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0369800, gene-QOZ80_5BG0417380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0071920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014129 |
| Poaceae | Oryza coarctata | 1 | Oco10G011970 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g39410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G173600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504591, Pt_Chr0504607 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G018700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G479000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG043980, gene_TRIDC1BG049810 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G296300.2, TraesCS1B02G305200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb290130_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14208, nbis-gene-24193 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27025, Zma_g28416 |