Basic Information
Locus ID:
CH05.2226
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 18261525 | 18267343 | + | CH05.2226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 65,176.35 Da | 50.25 | 77.46 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 12 | 140 | 4.61629E-70 | IPR000608 |
| CDD | cd02947 | TRX_family | 491 | 579 | 2.75982E-31 | - |
| Pfam | PF00085 | Thioredoxin | 497 | 578 | 2.4E-21 | IPR013766 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 14 | 141 | 8.0E-50 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 8 | 140 | 5.78E-60 | IPR016135 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 471 | 579 | 5.18E-29 | IPR036249 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 5 | 143 | 1.5E-66 | IPR016135 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 457 | 585 | 4.5E-33 | - |
| SMART | SM00212 | ubc_7 | 13 | 171 | 2.4E-69 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 10 | 161 | 55.255573 | IPR000608 |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 451 | 584 | 12.243704 | IPR013766 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 83 | 98 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 405 | - | - |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08690.1 | ubiquitin-conjugating enzyme 11. | 4.04E-87 |
| RefSeq | XP_012700297.1 | ubiquitin-conjugating enzyme E2 11 isoform X1 [Setaria italica] | 8.89E-91 |
| P35134 | Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana OX=3702 GN=UBC11 PE=1 SV=2 | 3.88E-86 | |
| TrEMBL | A0A8S2A274 | Genome assembly, chromosome: 3 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS6670 PE=4 SV=1 | 5.19E-98 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH05.2226.