Basic Information
Locus ID:
CH05.2166
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 17663936 | 17670559 | - | CH05.2166 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 112,906.85 Da | 51.08 | 78.65 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 277 | 630 | 8.81281E-79 | - |
| CDD | cd18793 | SF2_C_SNF | 868 | 973 | 9.96797E-53 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 746 | 782 | 1.2E-4 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 290 | 708 | 3.8E-66 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 863 | 963 | 8.3E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 638 | 1020 | 4.04E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 259 | 630 | 1.37E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 741 | 783 | 9.36E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 737 | 796 | 7.4E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 248 | 334 | 1.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 496 | 644 | 1.4E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 645 | 1021 | 2.1E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 399 | 491 | 1.1E-10 | IPR038718 |
| SMART | SM00487 | ultradead3 | 273 | 607 | 1.2E-23 | IPR014001 |
| SMART | SM00490 | helicmild6 | 880 | 963 | 2.7E-16 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 419 | 592 | 10.377048 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 850 | 1016 | 13.516487 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 746 | 785 | 10.881201 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 761 | 770 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 499 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 6.36E-286 |
| RefSeq | XP_004957553.1 | helicase-like transcription factor CHR28 isoform X1 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 6.11E-285 | |
| TrEMBL | A0A368Q4H2 | Helicase-like transcription factor CHR28 OS=Setaria italica OX=4555 GN=SETIT_2G297900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology