Basic Information
Locus ID:
CH05.2077
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 16934656 | 16941156 | + | CH05.2077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 104,029.48 Da | 49.52 | 72.74 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 498 | 638 | 2.22085E-65 | - |
| Pfam | PF03358 | NADPH-dependent FMN reductase | 750 | 877 | 1.4E-10 | IPR005025 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 162 | 406 | 8.3E-70 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 163 | 600 | 8.89E-26 | IPR043502 |
| SUPERFAMILY | SSF52218 | Flavoproteins | 737 | 933 | 3.8E-59 | IPR029039 |
| Gene3D | G3DSA:3.40.50.360 | - | 734 | 934 | 3.5E-80 | IPR029039 |
| TIGRFAM | TIGR01755 | flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV | 736 | 932 | 3.3E-69 | IPR010089 |
| ProSiteProfiles | PS50902 | Flavodoxin-like domain profile. | 738 | 925 | 21.236612 | IPR008254 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 89 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54500.1 | flavodoxin-like quinone reductase 1. Encodes a flavin mononucleotide-binding flavodoxin-like quinone reductase that is a primary auxin-response gene. | 7.73E-107 |
| RefSeq | XP_020406093.2 | uncharacterized protein LOC103652526 [Zea mays] | 6.35E-299 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 5.21E-140 | |
| TrEMBL | A0A3L6SZH4 | Integrase catalytic domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM05G35190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology