Basic Information
Locus ID:
CH05.1885
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 15331577 | 15336845 | + | CH05.1885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 145,022.38 Da | 46.38 | 86.89 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 953 | 992 | 4.9E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 571 | 679 | 2.2E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 370 | 435 | 2.88E-7 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 948 | 998 | 1.7E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 950 | 1003 | 2.1E-8 | - |
| SMART | SM00256 | fbox_2 | 954 | 994 | 7.2E-10 | IPR001810 |
| SMART | SM00256 | fbox_2 | 364 | 403 | 31.0 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 1050 | 1284 | 4.8E-14 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 506 | 666 | 9.2E-13 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 67 | 314 | 1.6E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 948 | 995 | 10.7692 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 1.85E-16 |
| RefSeq | XP_021303989.1 | uncharacterized protein LOC8063552 [Sorghum bicolor] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 1.82E-15 | |
| TrEMBL | A0A835BYG0 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_026581 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology