Basic Information
Locus ID:
CH05.1879
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 15270208 | 15277806 | - | CH05.1879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 142,170.14 Da | 49.97 | 73.53 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 677 | 833 | 1.44142E-26 | - |
| CDD | cd12108 | Hr-like | 41 | 209 | 4.06145E-14 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1144 | 1187 | 1.31848E-18 | - |
| CDD | cd12108 | Hr-like | 336 | 464 | 1.38997E-18 | - |
| Pfam | PF05495 | CHY zinc finger | 1016 | 1091 | 2.8E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 333 | 466 | 1.0E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 675 | 834 | 3.0E-8 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1192 | 1249 | 1.1E-22 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1007 | 1072 | 8.5E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1143 | 1191 | 5.47E-6 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1082 | 1137 | 2.62E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 673 | 893 | 1.6E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1138 | 1188 | 1.5E-7 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 335 | 482 | 1.8E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 136 | 229 | 1.3E-16 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1216 | 1257 | 1.5E-16 | - |
| SMART | SM00184 | ring_2 | 1145 | 1186 | 3.4E-4 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1081 | 1144 | 29.946346 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1145 | 1186 | 10.851695 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1009 | 1078 | 26.216539 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 100 | - | - |
| Coils | Coil | Coil | 342 | 362 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_039837242.1 | zinc finger protein BRUTUS-like [Panicum virgatum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7EAN8 | Zinc finger protein BRUTUS OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G180100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology