Basic Information
Locus ID:
CH05.176
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 1254113 | 1266397 | + | CH05.176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 199,344.95 Da | 56.23 | 81.20 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 890 | 926 | 3.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 539 | 631 | 3.05E-10 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 890 | 958 | 8.11E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 889 | 930 | 4.2E-7 | - |
| SMART | SM00256 | fbox_2 | 890 | 930 | 0.0049 | IPR001810 |
| SMART | SM00256 | fbox_2 | 539 | 576 | 39.0 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1389 | 1541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1604 | 1629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1401 | 1417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1272 | 1328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1429 | 1444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1596 | 1629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1500 | 1515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1550 | 1569 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039835510.1 | uncharacterized protein LOC120696618 [Panicum virgatum] | 4.67E-133 |
| TrEMBL | A0A8T0URC1 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG011600 PE=4 SV=1 | 1.06E-131 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH04.174, BH05.115, CH04.186, CH05.176 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0198350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G030800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0106362 |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G388100, Tel2E01G801100, Tel2E01G802400 ... |
| Poaceae | Triticum dicoccoides | 11 | gene_TRIDC1AG034980, gene_TRIDC1BG040330 ... |
| Poaceae | Triticum aestivum | 18 | TraesCS1A02G232300.1, TraesCS1A02G232400.1 ... |