Basic Information
Locus ID:
CH05.1703
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 13951110 | 13957948 | + | CH05.1703 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 123,659.84 Da | 38.48 | 71.32 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 890 | 925 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 977 | 1009 | 0.025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 805 | 1116 | 1.83E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 330 | 601 | 7.22E-15 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 777 | 1117 | 1.1E-123 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 314 | 627 | 9.1E-16 | - |
| SMART | SM00320 | WD40_4 | 885 | 925 | 3.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 794 | 832 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1020 | 1059 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 928 | 967 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 971 | 1009 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 843 | 882 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1076 | 1115 | 22.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 978 | 1011 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 892 | 934 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 254 | 604 | 8.753906 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 978 | 1011 | 9.889235 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 892 | 927 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 867 | 891 | 8.770704 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 869 | 883 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 996 | 1010 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 869 | 883 | 3.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 912 | 926 | 3.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 996 | 1010 | 3.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 42 | - | - |
| Coils | Coil | Coil | 645 | 665 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 6.54E-248 |
| RefSeq | XP_025809436.1 | protein SUPPRESSOR OF PHYA-105 1-like [Panicum hallii] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 6.31E-247 | |
| TrEMBL | A0A2S3H9G7 | Protein SPA1-RELATED 2 OS=Panicum hallii OX=206008 GN=PAHAL_3G174600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology