Basic Information
Locus ID:
CH05.1579
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 12986113 | 12991015 | + | CH05.1579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 93,218.69 Da | 42.43 | 84.01 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 538 | 671 | 4.32261E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 540 | 670 | 2.0E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 693 | 736 | 8.9E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 500 | 739 | 7.41E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 499 | 671 | 2.0E-97 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 672 | 751 | 2.0E-97 | - |
| SMART | SM00382 | AAA_5 | 536 | 673 | 2.9E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 643 | 662 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 232 | - | - |
| Coils | Coil | Coil | 723 | 752 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004961073.1 | putative cell division cycle ATPase [Setaria italica] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 1.81E-67 | |
| TrEMBL | K3Z3U6 | AAA domain-containing protein OS=Setaria italica OX=4555 GN=101785471 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology