Basic Information
Locus ID:
CH05.1467
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 11928146 | 11933093 | + | CH05.1467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 108,736.34 Da | 35.82 | 98.59 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 196 | 215 | 0.028 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 739 | 1022 | 1.6E-35 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 47 | 87 | 8.0E-6 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 530 | 568 | 1.5E-6 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 331 | 622 | 1.18E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 733 | 1027 | 3.96E-66 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 96 | 424 | 8.63E-62 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 47 | 159 | 5.1E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 253 | 358 | 5.1E-32 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 821 | 1032 | 3.2E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 160 | 252 | 7.7E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 362 | 648 | 1.6E-82 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 724 | 820 | 4.1E-19 | - |
| SMART | SM00220 | serkin_6 | 737 | 1032 | 5.5E-24 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 139 | 163 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 217 | 241 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 362 | 386 | 84.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 193 | 216 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 314 | 338 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 290 | 313 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 164 | 188 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 507 | 530 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 531 | 555 | 36.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 737 | 1032 | 34.760464 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 875 | 887 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 3.76E-124 |
| RefSeq | XP_039799530.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Panicum virgatum] | 3.31E-270 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 3.66E-123 | |
| TrEMBL | A0A8T0TYI7 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG177727 PE=3 SV=1 | 7.48E-269 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology