Basic Information
Locus ID:
CH05.1355
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 11048585 | 11051730 | + | CH05.1355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 59,745.98 Da | 55.44 | 83.15 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 39 | 74 | 3.5E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 28 | 82 | 2.62E-12 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 184 | 432 | 8.84E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 31 | 80 | 2.3E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 158 | 262 | 2.3E-7 | IPR032675 |
| SMART | SM00256 | fbox_2 | 42 | 81 | 0.0011 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 36 | 72 | 9.550458 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G28410.1 | F-box/RNI-like superfamily protein. | 1.57E-11 |
| RefSeq | XP_052164573.1 | uncharacterized protein LOC127781626 [Oryza glaberrima] | 6.16E-176 |
| Q9LSJ3 | Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana OX=3702 GN=At3g28410 PE=4 SV=2 | 1.56E-10 | |
| TrEMBL | A0A1E5V770 | F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0017966 PE=4 SV=1 | 2.21E-194 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology