Basic Information
Locus ID:
CH05.1235
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 9959979 | 9963865 | - | CH05.1235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 100,720.86 Da | 48.41 | 80.72 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 688 | 806 | 3.20487E-30 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 691 | 814 | 2.9E-22 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 677 | 850 | 2.55E-34 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 653 | 896 | 2.2E-69 | IPR016135 |
| SMART | SM00212 | ubc_7 | 689 | 843 | 1.5E-18 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 686 | 843 | 33.250427 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 629 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33770.1 | phosphate 2. Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. | 7.66E-93 |
| RefSeq | XP_039841195.1 | probable ubiquitin-conjugating enzyme E2 23 [Panicum virgatum] | 5.24E-246 |
| Q8VY10 | Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana OX=3702 GN=UBC24 PE=1 SV=1 | 7.48E-92 | |
| TrEMBL | A0A5J9U213 | UBC core domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_33639 PE=4 SV=1 | 2.71E-250 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 15 | AH05.1035, BH05.1090, BH05.3569, BH05.3573, BH05.3575 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0399110, gene-QOZ80_5AG0399230 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_014680, gene-QYE76_032195, gene-QYE76_061273 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G032900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G009630 |