Basic Information
Locus ID:
CH05.1052
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 8518114 | 8520205 | + | CH05.1052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 63,288.21 Da | 39.44 | 88.02 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13519 | von Willebrand factor type A domain | 57 | 172 | 2.7E-15 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 55 | 223 | 1.05E-21 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 56 | 225 | 1.4E-24 | IPR036465 |
| SMART | SM00327 | VWA_4 | 54 | 227 | 2.4E-12 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 56 | 230 | 15.201415 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 330 | - | - |
| Coils | Coil | Coil | 527 | 561 | - | - |
| Coils | Coil | Coil | 486 | 513 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051228342.1 | uncharacterized protein LOC127345851 isoform X1 [Lolium perenne] | 3.7E-150 |
| TrEMBL | A0A5J9U4J9 | VWFA domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_34098 PE=4 SV=1 | 1.86E-107 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH05.388, AH05.865, AH05.867, BH01.4317, BH01.4319, BH05.448 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0670800, gene-QOZ80_9AG0675400 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_039716, gene-QYE76_058228, gene-QYE76_058230 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G001520, Oco09G001530 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0605438, Pt_Chr0605787 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18273, nbis-gene-53961, nbis-gene-53963 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17598 |