Basic Information
Locus ID:
CH05.1005
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 7983025 | 7990264 | + | CH05.1005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 168,531.55 Da | 47.83 | 86.68 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1137 | 1518 | 8.28336E-103 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1183 | 1520 | 3.2E-78 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 219 | 624 | 3.49E-26 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1129 | 1513 | 3.66E-86 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1404 | 1517 | 4.7E-28 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1267 | 1364 | 6.3E-38 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1136 | 1399 | 6.3E-38 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 215 | 638 | 6.7E-31 | IPR011989 |
| SMART | SM00119 | hect_3 | 1147 | 1520 | 1.7E-87 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1161 | 1520 | 60.58255 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 8.73E-221 |
| RefSeq | XP_034584352.1 | E3 ubiquitin-protein ligase UPL4-like isoform X2 [Setaria viridis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 8.47E-220 | |
| TrEMBL | A0A1E5UXM8 | HECT-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0021310 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology