HalophFGD

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Basic Information
Locus ID: CH04.980
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: synthase
Maps and Mapping Data
Chromosome Start End Strand ID
CH04 12628514 12630839 + CH04.980
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.53 31,160.51 Da 45.59 83.78 -0.20
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF03936 Terpene synthase family, metal binding domain 1 214 1.2E-69 IPR005630
SUPERFAMILY SSF48576 Terpenoid synthases 2 270 7.48E-60 IPR008949
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase 1 269 2.5E-74 IPR008949
Gene Ontology
Molecular Function:
GO:0000287 (magnesium ion binding) GO:0010333 (terpene synthase activity) GO:0016829 (lyase activity)
KEGG Pathway
KO Term:
K14184 (alpha-humulene/beta-caryophyllene synthase [EC:4.2.3.104 4.2.3.57])
Pathway:
ko00909 (Sesquiterpenoid and triterpenoid biosynthesis) map00909 (Sesquiterpenoid and triterpenoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)
Reaction:
R08373 (trans,trans-Farnesyl diphosphate <=> Humulene + Diphosphate) R08541 (trans,trans-Farnesyl diphosphate <=> beta-Caryophyllene + Diphosphate)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G24210.1 terpene synthase 10. 1.07E-23
RefSeq XP_034603105.1 tau-cadinol synthase-like isoform X2 [Setaria viridis] 4.72E-132
Swiss-Prot Q5GJ59 Tau-cadinol synthase OS=Zea mays OX=4577 GN=TPS7 PE=1 SV=1 4.41E-88
TrEMBL A0A2T7CL79 (+)-delta-cadinene synthase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G062300 PE=4 SV=1 6.78E-165
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 10 AH01.1644, AH03.1629, AH04.970, AH04.971, AH05.1660 ...
AH07.3665, BH02.1697, BH04.1183, CH01.1931, CH04.980
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.