Basic Information
Locus ID:
CH04.907
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 11358103 | 11361326 | + | CH04.907 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 103,845.79 Da | 49.42 | 98.44 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 180 | 320 | 5.94309E-4 | - |
| CDD | cd14798 | RX-CC_like | 9 | 92 | 3.79778E-10 | IPR038005 |
| Pfam | PF18052 | Rx N-terminal domain | 12 | 91 | 2.7E-13 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 171 | 400 | 9.1E-39 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 506 | 862 | 1.67E-22 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 144 | 413 | 4.33E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 142 | 302 | 1.0E-27 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 492 | 866 | 9.3E-15 | IPR032675 |
| Gene3D | G3DSA:1.20.5.4130 | - | 11 | 121 | 1.2E-15 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 393 | 490 | 4.4E-11 | IPR036388 |
| PRINTS | PR00364 | Disease resistance protein signature | 249 | 263 | 4.0E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 646 | 662 | 4.0E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 176 | 191 | 4.0E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 346 | 360 | 4.0E-14 | - |
| Coils | Coil | Coil | 35 | 62 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46710.1 | NB-ARC domain-containing disease resistance protein. | 1.28E-47 |
| RefSeq | XP_004979046.2 | putative disease resistance RPP13-like protein 2 isoform X1 [Setaria italica] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 1.56E-274 | |
| TrEMBL | A0A368S5X3 | NB-ARC domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G089100v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology