Basic Information
Locus ID:
CH04.902
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 11305293 | 11313020 | + | CH04.902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 147,453.14 Da | 65.13 | 88.18 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 137 | 183 | 2.76658E-5 | - |
| Pfam | PF18052 | Rx N-terminal domain | 1 | 77 | 1.3E-9 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 140 | 383 | 1.3E-36 | IPR002182 |
| SUPERFAMILY | SSF52047 | RNI-like | 493 | 828 | 4.71E-18 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 135 | 397 | 7.13E-49 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 1 | 97 | 1.2E-12 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 295 | 382 | 3.3E-7 | IPR042197 |
| Gene3D | G3DSA:1.10.10.10 | - | 383 | 474 | 6.2E-8 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 123 | 287 | 1.6E-28 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 494 | 694 | 1.9E-6 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 330 | 344 | 8.0E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 160 | 175 | 8.0E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 629 | 645 | 8.0E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 233 | 247 | 8.0E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1012 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1267 | 1312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1039 | 1082 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1169 | 1183 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46710.1 | NB-ARC domain-containing disease resistance protein. | 1.39E-42 |
| RefSeq | XP_034606772.1 | disease resistance protein RGA5-like isoform X1 [Setaria viridis] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 3.21E-244 | |
| TrEMBL | A0A811QN74 | NB-ARC domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS40924 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology