Basic Information
Locus ID:
CH04.773
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 9212772 | 9213890 | + | CH04.773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 39,686.42 Da | 41.52 | 68.82 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 50 | 2.3E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 125 | 166 | 2.1E-4 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 168 | 214 | 1.7E-10 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 96 | 359 | 8.76E-44 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 55 | 1.27E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 28 | 273 | 1.5E-33 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 274 | 371 | 1.1E-5 | IPR015915 |
| SMART | SM00612 | kelc_smart | 131 | 179 | 1.2E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 180 | 229 | 3.5E-5 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 6.33E-67 |
| RefSeq | XP_025827219.1 | F-box/kelch-repeat protein At2g44130-like [Panicum hallii] | 3.04E-261 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 6.13E-66 | |
| TrEMBL | A0A1E5VAS5 | F-box/kelch-repeat protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0016726 PE=4 SV=1 | 4.17E-263 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology