Basic Information
Locus ID:
CH04.745
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Pectinesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 8778046 | 8788672 | + | CH04.745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 268,721.41 Da | 48.33 | 72.64 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15798 | PMEI-like_3 | 143 | 281 | 3.808E-26 | - |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1413 | 1519 | 1.1E-37 | IPR025452 |
| Pfam | PF02992 | Transposase family tnp2 | 1016 | 1229 | 1.9E-87 | IPR004242 |
| Pfam | PF01095 | Pectinesterase | 326 | 623 | 3.2E-126 | IPR000070 |
| Pfam | PF13963 | Transposase-associated domain | 699 | 772 | 2.3E-19 | IPR029480 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1673 | 1738 | 2.8E-13 | IPR025312 |
| Pfam | PF04043 | Plant invertase/pectin methylesterase inhibitor | 141 | 281 | 2.7E-24 | IPR006501 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 325 | 630 | 1.57E-98 | IPR011050 |
| SUPERFAMILY | SSF101148 | Plant invertase/pectin methylesterase inhibitor | 140 | 282 | 2.62E-23 | IPR035513 |
| Gene3D | G3DSA:1.20.140.40 | Invertase/pectin methylesterase inhibitor family protein | 139 | 284 | 6.2E-25 | IPR035513 |
| Gene3D | G3DSA:2.160.20.10 | - | 320 | 633 | 1.2E-110 | IPR012334 |
| SMART | SM00856 | PMEI_2 | 136 | 281 | 5.3E-24 | IPR006501 |
| TIGRFAM | TIGR01614 | PME_inhib: pectinesterase inhibitor domain | 126 | 281 | 4.2E-16 | IPR006501 |
| ProSitePatterns | PS00503 | Pectinesterase signature 2. | 474 | 483 | - | IPR033131 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1870 | 1884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1740 | 1760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1925 | 1966 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2023 | 2054 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2381 | 2402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1885 | 1899 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2023 | 2046 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1852 | 1903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2381 | 2430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 809 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1853 | 1867 | - | - |
| Coils | Coil | Coil | 2332 | 2366 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59010.1 | pectin methylesterase 61. | 3.33E-125 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q9LYT5 | Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana OX=3702 GN=PME35 PE=2 SV=1 | 3.21E-124 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |