Basic Information
Locus ID:
CH04.715
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 8226210 | 8228290 | - | CH04.715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 57,942.30 Da | 48.06 | 77.11 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 335 | 370 | 6.7E-6 | IPR005174 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 432 | 503 | 6.3E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 427 | 512 | 1.17E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 408 | 516 | 2.4E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 431 | 506 | 1.0E-18 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 430 | 510 | 15.459753 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 5.18E-16 |
| RefSeq | XP_034569764.1 | uncharacterized protein LOC117834253 [Setaria viridis] | 7.15E-148 |
| P19683 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 3.72E-17 | |
| TrEMBL | A0A835ERV9 | RRM domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_029303 PE=4 SV=1 | 2.1E-194 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology