Basic Information
Locus ID:
CH04.698
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the leguminous lectin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 7921969 | 7924050 | - | CH04.698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 68,970.46 Da | 36.09 | 95.01 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 34 | 267 | 2.58884E-69 | IPR001220 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 339 | 611 | 7.9E-42 | IPR001245 |
| Pfam | PF00139 | Legume lectin domain | 30 | 269 | 6.8E-50 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 35 | 267 | 5.13E-51 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 323 | 616 | 1.3E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 306 | 421 | 4.7E-23 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 28 | 275 | 3.4E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 422 | 623 | 2.5E-54 | - |
| SMART | SM00220 | serkin_6 | 336 | 615 | 8.2E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 336 | 623 | 36.272804 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 465 | 477 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 342 | 369 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10530.1 | Concanavalin A-like lectin protein kinase family protein. | 4.44E-96 |
| RefSeq | XP_004971117.1 | L-type lectin-domain containing receptor kinase IX.2 [Setaria italica] | 3.16E-232 |
| Q9LXA5 | L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1 | 4.31E-95 | |
| TrEMBL | A0A368RFI7 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_5G434500v2 PE=3 SV=1 | 7.14E-231 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH02.4399, CH02.4447, CH04.698 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0044910, gene-QOZ80_6BG0472060 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0103660.1, HORVU.MOREX.r3.3HG0325350.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_033622, gene-QYE76_033626, gene-QYE76_038280 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os08g24670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G182600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G033140, Chr05G000710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G130100, Tel2E01G132800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG006430 |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G055200.1, TraesCS2A02G057000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52831 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26408 |