Basic Information
Locus ID:
CH04.606
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 6332657 | 6335977 | + | CH04.606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 98,227.33 Da | 60.11 | 61.38 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 501 | 1.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 611 | 648 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 606 | 9.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 463 | 786 | 1.07E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 417 | 546 | 2.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 556 | 788 | 6.2E-47 | IPR015943 |
| SMART | SM00320 | WD40_4 | 743 | 784 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 568 | 606 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 502 | 4.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 702 | 742 | 0.48 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 689 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 648 | 2.4E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 615 | 649 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 615 | 649 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 470 | 503 | 13.39558 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 503 | 16.289801 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 575 | 609 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 575 | 615 | 14.552052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 489 | 503 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 593 | 607 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 489 | 503 | 1.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 635 | 649 | 1.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 593 | 607 | 1.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 142 | - | - |
| Coils | Coil | Coil | 113 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 3.23E-125 |
| RefSeq | XP_025828580.1 | uncharacterized protein LOC112903529 [Panicum hallii] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 2.59E-45 | |
| TrEMBL | A0A368S523 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_8G062400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology