Basic Information
Locus ID:
CH04.447
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Integrator complex subunit 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 4255997 | 4263394 | - | CH04.447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 128,627.37 Da | 51.93 | 91.10 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10189 | Integrator complex subunit 3 | 255 | 460 | 6.9E-79 | IPR019333 |
| Pfam | PF00069 | Protein kinase domain | 920 | 1079 | 1.8E-30 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 543 | 817 | 4.4E-52 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 527 | 820 | 7.28E-71 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 873 | 1067 | 2.7E-46 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 926 | 1102 | 1.4E-34 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 871 | 925 | 7.8E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 515 | 612 | 3.0E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 634 | 834 | 7.1E-52 | - |
| SMART | SM00220 | serkin_6 | 876 | 1116 | 7.3E-30 | IPR000719 |
| SMART | SM00220 | serkin_6 | 543 | 820 | 1.6E-40 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 876 | 1117 | 23.863152 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 543 | 838 | 38.378769 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 970 | 982 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 882 | 905 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 549 | 572 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 675 | 687 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35670.1 | calcium-dependent protein kinase 2. Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4. | 4.58E-79 |
| RefSeq | XP_034569398.1 | integrator complex subunit 3-like [Setaria viridis] | 1.67E-247 |
| Q53P85 | Calcium-dependent protein kinase 24 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK24 PE=1 SV=1 | 1.4E-89 | |
| TrEMBL | A0A4U6TBX0 | Ints3_N domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G051800v2 PE=3 SV=1 | 3.77E-246 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15626, jg4026 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_11594, gene_5093, gene_5095, gene_9976 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005060 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17843, Sbi_jg62468 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1042 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007191, GOSA_00007198 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59164 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028608, gene:ENSEOMG00000029681 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0002090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30051110 |
| Apiaceae | Apium graveolens | 1 | Ag1G01028 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714943, gene-LOC120103817 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.728.V1.1, AsparagusV1_09.1319.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21228 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14590.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017599m.g.v1.0, Thhalv10027440m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g021850.2N, BniB08g074420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0935 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0934 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-396 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.151 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.422, BH04.454, CH04.447 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671340, gene-QOZ80_9BG0694820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064719 |
| Poaceae | Oryza coarctata | 2 | Oco21G002170, Oco22G003000 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g07030.1, LOC_Os11g40750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G078100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G020590, Chr16G010160, Chr17G009250, Chr31G001630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G176100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032800, gene_TRIDC4BG017020 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G206300.1.cds1, TraesCS4D02G107300.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb091720_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27144 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18472 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2469, evm.TU.LG17.1513 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g19850, gene.Posoc05g19860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1002 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19605, nbisL1-mrna-30014 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3511 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16366 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.255 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015263 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4501 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20793 |
| Salicaceae | Populus euphratica | 1 | populus_peu01765 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132601549 |
| Solanaceae | Solanum chilense | 1 | SOLCI002970700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021634 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6559 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1477 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11590.v3.1 |