Basic Information
Locus ID:
CH04.446
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
CDPK9
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 4245826 | 4247330 | - | CH04.446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 23,102.23 Da | 63.08 | 88.12 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 153 | 204 | 1.48362E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 148 | 205 | 8.0E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 103 | 206 | 5.83E-22 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 126 | 139 | 6.0E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 140 | 205 | 6.0E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 78 | 103 | 1.2E-10 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 104 | 121 | 1.2E-10 | - |
| SMART | SM00054 | efh_1 | 149 | 177 | 0.034 | IPR002048 |
| SMART | SM00054 | efh_1 | 183 | 207 | 44.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 110 | 141 | 110.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 145 | 180 | 13.676544 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 183 | 207 | 8.878534 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 158 | 170 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23580.1 | calmodulin-like domain protein kinase 9. unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+ | 7.42E-55 |
| RefSeq | XP_039776157.1 | calcium-dependent protein kinase 24-like [Panicum virgatum] | 3.06E-67 |
| Q2QX45 | Calcium-dependent protein kinase 28 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK28 PE=3 SV=1 | 3.04E-66 | |
| TrEMBL | A0A8J5WKT4 | Calcium-dependent protein kinase OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0011g28699 PE=4 SV=1 | 1.35E-71 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah033093, Ah036874 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68967 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004643, gene:ENSEOMG00000006606 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0009830, CQ.Regalona.r1.7BG0018650 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G01810, Ag8G00088 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1311.V1.1 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043470.2N, BniB03g056960.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.915 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032026 |
| Poaceae | Echinochloa crus-galli | 1 | CH04.446 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G003830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G027700 |
| Poaceae | Zea mays | 2 | Zm00001eb015740_P001, Zm00001eb168390_P001 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18442, nbisL1-mrna-18491 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5501 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22750.v3.1 |