Basic Information
Locus ID:
CH04.401
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ADP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 3553374 | 3561274 | + | CH04.401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 147,159.52 Da | 40.55 | 99.05 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 1020 | 1042 | 0.1 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 18 | 298 | 2.7E-49 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 1127 | 1185 | 5.5E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 1265 | 1285 | 1.0 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 499 | 743 | 1.1E-42 | IPR002182 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 329 | 399 | 1.4E-6 | IPR000535 |
| SUPERFAMILY | SSF52047 | RNI-like | 1093 | 1304 | 1.49E-31 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 299 | 4.59E-70 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 482 | 756 | 6.7E-56 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 826 | 1059 | 9.86E-31 | - |
| SUPERFAMILY | SSF49354 | PapD-like | 318 | 435 | 1.39E-8 | IPR008962 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1086 | 1307 | 2.4E-37 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 484 | 647 | 2.4E-31 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 856 | 1066 | 4.2E-34 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 736 | 837 | 2.9E-12 | IPR036388 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 111 | 315 | 1.8E-50 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 316 | 430 | 2.2E-8 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 93 | 8.8E-22 | - |
| SMART | SM00220 | serkin_6 | 18 | 307 | 1.0E-31 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 311 | 437 | 11.412008 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 18 | 306 | 36.739227 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 154 | 166 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 24 | 46 | - | IPR017441 |
| PRINTS | PR00364 | Disease resistance protein signature | 1261 | 1277 | 5.1E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 689 | 703 | 5.1E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 521 | 536 | 5.1E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 592 | 606 | 5.1E-20 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11330.1 | S-locus lectin protein kinase family protein. | 3.69E-47 |
| RefSeq | XP_034569209.1 | uncharacterized protein LOC117833724 isoform X1 [Setaria viridis] | 0 |
| Q7XA42 | Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 | 5.75E-59 | |
| TrEMBL | A0A4U6TG33 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G049200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology