halophFGD

Basic Information

Locus ID: CH04.305

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Major Facilitator Superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH04	2584454	2590979	-	CH04.305

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.61	60,419.44 Da	43.13	106.31	0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17330	MFS_SLC46_TetA_like	19	422	7.94212E-48	-
Pfam	PF07690	Major Facilitator Superfamily	20	383	6.3E-24	IPR011701
SUPERFAMILY	SSF103473	MFS general substrate transporter	59	431	6.93E-37	IPR036259
Gene3D	G3DSA:1.20.1250.20	MFS general substrate transporter like domains	13	425	1.3E-33	IPR036259
ProSiteProfiles	PS50850	Major facilitator superfamily (MFS) profile.	10	429	14.418829	IPR020846
ProSitePatterns	PS00216	Sugar transport proteins signature 1.	78	95	-	IPR005829

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0022857 (transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G42210.1	Major facilitator superfamily protein.	1.88E-74
RefSeq	XP_034606617.1	tetracycline resistance protein, class H-like [Setaria viridis]	8.05E-289
TrEMBL	A0A4U6TFG2	MFS domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G033100v2 PE=4 SV=1	1.82E-287

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg11705, jg14464, jg2835, jg28905, jg861, jg862, jg863 ... jg865, jg866
Aizoaceae	Mesembryanthemum crystallinum	6	gene_26704, gene_3653, gene_7788, gene_8414, gene_9725 ... gene_9726
Amaranthaceae	Atriplex hortensis	4	Ah009620, Ah013535, Ah020686, Ah026070
Amaranthaceae	Beta vulgaris	6	BVRB_6g140900, BVRB_6g140910, BVRB_6g140920, BVRB_6g140930 ... BVRB_6g149110, BVRB_9g213530
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12275, Sbi_jg12791, Sbi_jg42952, Sbi_jg45560 ... Sbi_jg47265, Sbi_jg53100
Amaranthaceae	Salicornia europaea	3	Seu_jg11408, Seu_jg21533, Seu_jg8773
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00002392, GOSA_00018849, GOSA_00026923, GOSA_00029314
Amaranthaceae	Suaeda glauca	13	Sgl34085, Sgl34086, Sgl34087, Sgl34309, Sgl34310, Sgl34311 ... Sgl35380, Sgl39711, Sgl39712, Sgl39713, Sgl40733, Sgl55511, Sgl61360
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000000017, gene:ENSEOMG00000003526 ... gene:ENSEOMG00000017882, gene:ENSEOMG00000025656, gene:ENSEOMG00000038238, gene:ENSEOMG00000053054
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.6AG0015580, CQ.Regalona.r1.6BG0005900 ... CQ.Regalona.r1.6BG0016430, CQ.Regalona.r1.7BG0002480, CQ.Regalona.r1.9AG0022190
Anacardiaceae	Pistacia vera	5	pistato.v30048880, pistato.v30109240, pistato.v30109810 ... pistato.v30117230, pistato.v30169720
Apiaceae	Apium graveolens	4	Ag10G02176, Ag11G04522, Ag3G02551, Ag6G02387
Arecaceae	Cocos nucifera	4	COCNU_07G015010, contig69647704G000010 ... scaffold000534G000020, scaffold000534G000030
Arecaceae	Phoenix dactylifera	4	gene-LOC103698821, gene-LOC103703853, gene-LOC103708681 ... gene-LOC120110894
Asparagaceae	Asparagus officinalis	4	AsparagusV1_04.2180.V1.1, AsparagusV1_09.29.V1.1 ... AsparagusV1_09.31.V1.1, AsparagusV1_10.157.V1.1
Asteraceae	Flaveria trinervia	3	Ftri18G01725, Ftri18G30523, Ftri8G26845
Brassicaceae	Arabidopsis thaliana	4	AT2G16970.1, AT2G16980.2, AT2G16990.1, AT5G42210.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10022688m.g.v1.0, Thhalv10022689m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g30240.v2.2, Sp3g30270.v2.2, Sp7g08470.v2.2
Brassicaceae	Brassica nigra	11	BniB02g013110.2N, BniB02g013120.2N, BniB02g013130.2N ... BniB02g013140.2N, BniB03g064480.2N, BniB03g064490.2N, BniB04g026480.2N, BniB04g026490.2N, BniB04g026500.2N, BniB04g026510.2N, BniB06g036390.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G0820, Ceq07G1769, Ceq09G0660
Casuarinaceae	Casuarina glauca	3	Cgl03G0898, Cgl07G1916, Cgl09G0714
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g18650, gene.Cymno14g07840
Dunaliellaceae	Dunaliella salina	1	Dusal.0267s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g12750, gene.Thate09g02350
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1389
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.1290, evm.TU.LG02.1340, evm.TU.LG06.150 ... evm.TU.LG06.151, evm.TU.LG08.352
Plantaginaceae	Plantago ovata	8	Pov_00000064, Pov_00001704, Pov_00001705, Pov_00007325 ... Pov_00020614, Pov_00020616, Pov_00025251, Pov_00040190
Plumbaginaceae	Limonium bicolor	3	Lb1G03462, Lb1G05643, Lb2G15482
Poaceae	Echinochloa crus-galli	13	AH01.3034, AH04.291, AH04.292, AH04.293, AH04.294, AH07.2935 ... BH04.283, BH07.2751, CH01.3616, CH04.305, CH04.306, CH06.2031, CH07.2829
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2AG0115470, gene-QOZ80_2AG0140270 ... gene-QOZ80_2BG0169270, gene-QOZ80_2BG0195940, gene-QOZ80_9BG0698560
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0055040.1, HORVU.MOREX.r3.5HG0459940.1 ... HORVU.MOREX.r3.6HG0602560.1
Poaceae	Lolium multiflorum	4	gene-QYE76_003080, gene-QYE76_012388, gene-QYE76_012418 ... gene-QYE76_024262
Poaceae	Oryza coarctata	8	Oco03G017660, Oco04G018440, Oco09G005510, Oco10G006460 ... Oco10G006470, Oco21G001200, Oco21G001210, Oco22G002090
Poaceae	Oryza sativa	3	LOC_Os02g44730.1, LOC_Os05g24140.1, LOC_Os11g05390.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G297300, gene-BS78_01G297400, gene-BS78_K072600 ... gene-BS78_04G225300, gene-BS78_05G050900
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0203663, Pt_Chr0203669, Pt_Chr0503089, Pt_Chr0703201 ... Pt_Chr0703225
Poaceae	Sporobolus alterniflorus	6	Chr06G005490, Chr06G023930, Chr09G004120, Chr13G020840 ... Chr15G007100, Chr31G001010
Poaceae	Thinopyrum elongatum	3	Tel1E01G351700, Tel5E01G234300, Tel6E01G470600
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG030870, gene_TRIDC1BG036350 ... gene_TRIDC5AG021970, gene_TRIDC5BG022460, gene_TRIDC6AG038860, gene_TRIDC6BG045830
Poaceae	Triticum aestivum	9	TraesCS1A02G204300.1, TraesCS1B02G217900.1 ... TraesCS1D02G207600.1, TraesCS5A02G129300.1, TraesCS5B02G127900.1, TraesCS5D02G136800.1, TraesCS6A02G252300.2, TraesCS6B02G272300.1, TraesCS6D02G233800.1
Poaceae	Zea mays	5	Zm00001eb022580_P001, Zm00001eb097590_P001 ... Zm00001eb196970_P002, Zm00001eb250050_P001, Zm00001eb370970_P001
Poaceae	Zoysia japonica	6	nbis-gene-25648, nbis-gene-36229, nbis-gene-47024 ... nbis-gene-47025, nbis-gene-57317, nbis-gene-9217
Poaceae	Zoysia macrostachya	4	Zma_g12836, Zma_g14088, Zma_g15620, Zma_g24735
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.1785, evm.TU.LG03.385, evm.TU.LG08.1472 ... evm.TU.LG09.150, evm.TU.LG12.1323, evm.TU.LG12.1748, evm.TU.LG22.364
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g00280, gene.Posoc06g14680
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.2348, evm.TU.Scaffold_8_RagTag.1325
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-9108
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-4677, nbisL1-mrna-7912, nbisL1-mrna-842
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-15324, nbisL1-mrna-3221
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000016l.42, evm.TU.utg000018l.448
Rhizophoraceae	Kandelia obovata	2	Maker00002884, Maker00017199
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-3302, nbisL1-mrna-4599
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11171, nbisL1-mrna-22485
Salicaceae	Populus euphratica	6	populus_peu06109, populus_peu08667, populus_peu15417 ... populus_peu19971, populus_peu33057, populus_peu36689
Solanaceae	Lycium barbarum	6	gene-LOC132600285, gene-LOC132604165, gene-LOC132606669 ... gene-LOC132614149, gene-LOC132614887, gene-LOC132628157
Solanaceae	Solanum chilense	7	SOLCI000016000, SOLCI000368900, SOLCI001897900 ... SOLCI003006800, SOLCI003006900, SOLCI003721300, SOLCI005526000
Solanaceae	Solanum pennellii	7	gene-LOC107002337, gene-LOC107004119, gene-LOC107005044 ... gene-LOC107005851, gene-LOC107013992, gene-LOC107016032, gene-LOC107026252
Tamaricaceae	Reaumuria soongarica	5	MSTRG.12453_chr07_+, gene_1138, gene_12301, gene_17989 ... gene_7952
Tamaricaceae	Tamarix chinensis	3	TC04G2514, TC11G1730, TC12G0807
Zosteraceae	Zostera marina	2	Zosma01g20000.v3.1, Zosma06g18000.v3.1