Basic Information
Locus ID:
CH04.289
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 2358647 | 2359711 | + | CH04.289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.41 | 36,664.36 Da | 41.77 | 69.92 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 299 | 342 | 9.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 347 | 1.08E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 269 | 348 | 6.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 299 | 341 | 4.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 299 | 342 | 11.913911 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 188 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18930.1 | RING/U-box superfamily protein. | 1.27E-8 |
| RefSeq | XP_039840496.1 | E3 ubiquitin-protein ligase MPSR1-like [Panicum virgatum] | 2.48E-22 |
| Q9H6Y7 | E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1 | 2.51E-8 | |
| TrEMBL | A0A835G3C1 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_000041 PE=4 SV=1 | 3.17E-22 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||