Basic Information
Locus ID:
CH04.2731
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 42121185 | 42124044 | + | CH04.2731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 78,950.47 Da | 49.84 | 86.95 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 608 | 665 | 1.8E-9 | IPR026960 |
| Pfam | PF00646 | F-box domain | 154 | 191 | 4.4E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 279 | 417 | 6.28E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 147 | 191 | 8.24E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 151 | 433 | 2.9E-6 | IPR032675 |
| SMART | SM00256 | fbox_2 | 158 | 198 | 0.0098 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 230 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12840.1 | 1.74E-7 | |
| RefSeq | XP_039851727.1 | uncharacterized protein LOC120710124 [Panicum virgatum] | 2.36E-95 |
| Q9LTV2 | Putative FBD-associated F-box protein At3g12840 OS=Arabidopsis thaliana OX=3702 GN=At3g12840 PE=4 SV=1 | 1.71E-6 | |
| TrEMBL | A0A8T0S1J4 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG445800 PE=4 SV=1 | 2.36E-88 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology