Basic Information
Locus ID:
CH04.2700
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 41836934 | 41837647 | + | CH04.2700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 23,573.38 Da | 32.24 | 78.73 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 39 | 180 | 8.9E-20 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 34 | 232 | 9.81E-42 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 32 | 233 | 1.4E-36 | IPR037176 |
| SMART | SM00205 | tha2 | 35 | 231 | 2.1E-17 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 186 | 237 | 0.072 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 190 | 6.0E-28 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 32 | 231 | 18.668234 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28790.1 | Pathogenesis-related thaumatin superfamily protein. | 2.07E-24 |
| RefSeq | XP_004980057.3 | uncharacterized protein LOC101761990 [Setaria italica] | 6.72E-123 |
| Q41350 | Osmotin-like protein OS=Solanum lycopersicum OX=4081 PE=1 SV=1 | 7.86E-24 | |
| TrEMBL | K3ZNS8 | Thaumatin-like protein OS=Setaria italica OX=4555 PE=4 SV=1 | 3.21E-125 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2288, AH06.711, BH04.2359, CH04.2700 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0693120, gene-QOZ80_9BG0718890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0358550.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065465 |
| Poaceae | Oryza coarctata | 3 | Oco21G010080, Oco22G011390, Oco22G011400 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g47670.1, LOC_Os11g47680.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G264900, gene-BS78_05G282600, gene-BS78_K334800 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G013680, Chr0G006710, Chr26G000200, Chr31G008700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G222100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4AG028160 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G174300.1.cds1, TraesCS4B02G143200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb047690_P001, Zm00001eb164710_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19156 |