Basic Information
Locus ID:
CH04.2670
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 41557789 | 41564680 | + | CH04.2670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 103,564.25 Da | 40.23 | 64.14 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 286 | 329 | 0.00546426 | - |
| Pfam | PF00069 | Protein kinase domain | 821 | 951 | 6.7E-11 | IPR000719 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 14 | 73 | 1.3E-10 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 407 | 542 | 1.6E-18 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 390 | 951 | 4.56E-54 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 238 | 337 | 8.1E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 483 | 549 | 9.3E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 377 | 482 | 3.3E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 815 | 965 | 4.6E-24 | - |
| SMART | SM00179 | egfca_6 | 286 | 337 | 3.7E-4 | IPR001881 |
| SMART | SM00220 | serkin_6 | 403 | 959 | 9.7E-9 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 403 | 959 | 17.446316 | IPR000719 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 286 | 320 | - | IPR018097 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 409 | 431 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 636 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 821 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 2.28E-77 |
| RefSeq | XP_034606618.1 | wall-associated receptor kinase 5-like [Setaria viridis] | 2.79E-227 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 2.22E-76 | |
| TrEMBL | A0A835FWQ0 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_003348 PE=4 SV=1 | 1.63E-243 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2283, BH04.2243, CH03.2334, CH04.2670 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_9AG0692750, gene-QOZ80_9AG0692840 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0103900.1 |
| Poaceae | Oryza coarctata | 4 | Oco08G001920, Oco08G001950, Oco18G001800, Oco21G009920 |
| Poaceae | Oryza sativa | 10 | ChrSy.fgenesh.mRNA.14, LOC_Os04g14304.1, LOC_Os11g46860.1 ... |
| Poaceae | Paspalum vaginatum | 17 | gene-BS78_05G102300, gene-BS78_05G242700, gene-BS78_K099700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205048, Pt_Chr0205049, Pt_Chr0205050 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G013790, Chr0G006760, Chr31G008600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G159400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG008000, gene_TRIDC2AG008010 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G071800.1, TraesCS2A02G071900.1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18470, nbis-gene-18479, nbis-gene-37655 |