Basic Information
Locus ID:
CH04.2668
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 41494517 | 41501019 | + | CH04.2668 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.88 | 144,973.31 Da | 64.49 | 51.61 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 789 | 918 | 6.39402E-62 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 801 | 909 | 2.6E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 594 | 764 | 3.7E-48 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 642 | 924 | 1.29E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 21 | 56 | 8.7E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 781 | 951 | 1.4E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 547 | 780 | 7.7E-87 | IPR027417 |
| SMART | SM00456 | ww_5 | 25 | 56 | 4.3E-5 | IPR001202 |
| SMART | SM00487 | ultradead3 | 589 | 792 | 1.6E-64 | IPR014001 |
| SMART | SM00490 | helicmild6 | 829 | 909 | 9.0E-33 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 570 | 598 | 11.352551 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 601 | 775 | 30.616188 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 804 | 948 | 25.237995 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 24 | 56 | 10.955 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 721 | 729 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 30 | 54 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1143 | 1204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1239 | 1255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1206 | 1238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 5.02E-219 |
| RefSeq | XP_004980010.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X1 [Setaria italica] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 4.85E-218 | |
| TrEMBL | K3ZGX2 | DEAD-box ATP-dependent RNA helicase 40 OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology