halophFGD

Basic Information

Locus ID: CH04.2594

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH04	40371696	40379490	+	CH04.2594

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.18	46,863.78 Da	47.63	57.73	-0.77

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	172	208	5.95E-7	IPR036322
Gene3D	G3DSA:2.130.10.10	-	155	257	1.2E-8	IPR015943
SMART	SM00320	WD40_4	166	205	1.5E-5	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	173	206	13.11507	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	173	206	10.891048	-
MobiDBLite	mobidb-lite	consensus disorder prediction	148	162	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	276	307	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	236	269	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	236	322	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	128	167	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K20241 (WD repeat-containing protein 44)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G15470.1	Transducin/WD40 repeat-like superfamily protein.	2.89E-8
RefSeq	XP_021301411.1	WD repeat-containing protein 44 isoform X2 [Sorghum bicolor]	1.59E-11
TrEMBL	C5YST4	WD_REPEATS_REGION domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3008G057600 PE=4 SV=2	3.6E-10

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for CH04.2594.