Basic Information
Locus ID:
CH04.2578
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 39937202 | 39941404 | - | CH04.2578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 69,208.15 Da | 40.50 | 75.46 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 212 | 409 | 8.77165E-99 | - |
| CDD | cd18794 | SF2_C_RecQ | 410 | 543 | 2.51159E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 427 | 532 | 4.5E-18 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 546 | 615 | 9.6E-13 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 220 | 389 | 1.0E-14 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 258 | 555 | 7.14E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 410 | 616 | 4.1E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 176 | 409 | 1.9E-82 | IPR027417 |
| SMART | SM00490 | helicmild6 | 452 | 534 | 4.7E-24 | IPR001650 |
| SMART | SM00487 | ultradead3 | 214 | 418 | 9.9E-27 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 212 | 616 | 1.5E-153 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 424 | 577 | 19.287613 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 226 | 402 | 20.468325 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 341 | 350 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 185 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 1.22E-242 |
| RefSeq | XP_004980856.3 | ATP-dependent DNA helicase Q-like 1 [Setaria italica] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 1.17E-241 | |
| TrEMBL | A0A3L6PMT2 | ATP-dependent DNA helicase OS=Panicum miliaceum OX=4540 GN=C2845_PM18G12590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology