Basic Information
Locus ID:
CH04.2559
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 39473177 | 39475945 | + | CH04.2559 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 45,065.03 Da | 43.72 | 96.64 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 189 | 382 | 1.3E-21 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 198 | 384 | 1.75E-44 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 188 | 396 | 3.5E-52 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 15 | 125 | 1.9E-16 | IPR036537 |
| SMART | SM00220 | serkin_6 | 83 | 391 | 6.3E-7 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 8 | 384 | 23.806616 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 228 | 240 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23290.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 21. Encodes a cysteine-rich receptor-like protein kinase. | 3.16E-42 |
| RefSeq | XP_039777915.1 | cysteine-rich receptor-like protein kinase 25 [Panicum virgatum] | 1.3E-203 |
| Q3E9X6 | Cysteine-rich receptor-like protein kinase 21 OS=Arabidopsis thaliana OX=3702 GN=CRK21 PE=2 SV=1 | 4.37E-41 | |
| TrEMBL | A0A2T7CQX7 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G248500 PE=4 SV=1 | 4.97E-208 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.2134, BH04.2218, CH04.2559 |
| Poaceae | Oryza coarctata | 3 | Oco21G009490, Oco21G009540, Oco22G010880 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g44660.1, LOC_Os11g44690.1 |