Basic Information
Locus ID:
CH04.2550
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein MID1-COMPLEMENTING ACTIVITY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 39365113 | 39372135 | + | CH04.2550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 65,592.93 Da | 55.71 | 81.51 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 417 | 575 | 1.9E-32 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 392 | 583 | 1.75E-49 | IPR011009 |
| Gene3D | G3DSA:1.20.930.20 | - | 193 | 289 | 4.9E-21 | IPR036537 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 493 | 584 | 7.2E-21 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 377 | 492 | 3.8E-32 | - |
| SMART | SM00220 | serkin_6 | 416 | 584 | 1.0E-7 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 416 | 584 | 29.304741 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 422 | 443 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 539 | 551 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 332 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04570.3 | - | 5.25E-38 |
| RefSeq | XP_025826808.1 | G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X3 [Panicum hallii] | 1.21E-156 |
| Q9SYS3 | Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana OX=3702 GN=CRK40 PE=2 SV=1 | 1.12E-35 | |
| TrEMBL | A0A2T8IA75 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_8G253400 PE=4 SV=1 | 1.87E-155 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH05.3360, CH04.2550 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0692060, gene-QOZ80_9AG0692200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642600.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_065633, gene-QYE76_065634 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G234100, gene-BS78_K259400, gene-BS78_K259700 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103436, Pt_Chr0103449 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G006690, Chr23G019530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G121900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG064110, gene_TRIDC7AG005940 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G433800.1, TraesCS7A02G056800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb165320_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19130, Zma_g19133 |