Basic Information
Locus ID:
CH04.2541
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ribonuclease H protein At1g65750
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 39241925 | 39243642 | - | CH04.2541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 45,110.85 Da | 52.89 | 82.86 | 0.09 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039815026.1 | stigma-specific STIG1-like protein 1 [Panicum virgatum] | 2.51E-23 |
| TrEMBL | A0A835KZ49 | zf-RVT domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_002560 PE=4 SV=1 | 6.13E-66 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7BG0018400 |
| Poaceae | Echinochloa crus-galli | 11 | AH01.3501, AH06.331, AH07.270, BH01.462, BH07.1564, CH03.782 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0250430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0278890.1.CDS1 |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_006881, gene-QYE76_007068, gene-QYE76_008479 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os02g04410.1, LOC_Os10g21479.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K007300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106216, Pt_Chr0704471 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G019810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G701600 |
| Poaceae | Triticum aestivum | 1 | TraesCS4B02G395400.1 |