Basic Information
Locus ID:
CH04.2367
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 37241223 | 37245827 | - | CH04.2367 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 45,433.36 Da | 46.84 | 66.31 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 273 | 347 | 7.24037E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 71 | 141 | 8.11066E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 155 | 229 | 1.37551E-47 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 137 | 6.9E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 275 | 341 | 7.5E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 156 | 226 | 1.8E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 265 | 357 | 3.8E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 68 | 232 | 5.57E-46 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 248 | 352 | 3.1E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 152 | 246 | 2.9E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 151 | 2.3E-27 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 70 | 139 | 3.1E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 274 | 343 | 2.2E-19 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 155 | 228 | 9.4E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 273 | 347 | 16.755964 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 154 | 232 | 17.932785 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 143 | 15.596196 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 269 | - | - |
| Coils | Coil | Coil | 15 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 9.63E-176 |
| RefSeq | XP_039777648.1 | oligouridylate-binding protein 1B-like [Panicum virgatum] | 1.39E-246 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 9.25E-175 | |
| TrEMBL | A0A8T0PF62 | Oligouridylate binding protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG338800 PE=4 SV=1 | 8.32E-246 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology