Basic Information
Locus ID:
CH04.2316
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 36416944 | 36420457 | - | CH04.2316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 39,590.33 Da | 42.03 | 83.51 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 156 | 235 | 7.4E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 320 | 351 | 0.19 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 95 | 358 | 6.59E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 359 | 2.5E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 314 | 353 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 177 | 0.42 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 310 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 219 | 52.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 60 | - | - |
| Coils | Coil | Coil | 373 | 373 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 1.06E-84 |
| RefSeq | XP_039822373.1 | SEC12-like protein 2 isoform X1 [Panicum virgatum] | 2.18E-215 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 2.17E-82 | |
| TrEMBL | A0A8T0PKA2 | ANAPC4_WD40 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG345100 PE=4 SV=1 | 4.92E-214 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology