Basic Information
Locus ID:
CH04.2313
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 36392300 | 36393490 | + | CH04.2313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 41,281.37 Da | 61.78 | 68.91 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 214 | 257 | 5.67225E-18 | - |
| Pfam | PF13639 | Ring finger domain | 215 | 257 | 1.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 262 | 5.71E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 264 | 3.7E-20 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 211 | 265 | 0.0075 | - |
| SMART | SM00184 | ring_2 | 215 | 256 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 215 | 257 | 13.035139 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10380.1 | RING/U-box superfamily protein. Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. | 5.53E-24 |
| RefSeq | XP_034569011.1 | RING-H2 finger protein ATL51-like [Setaria viridis] | 1.27E-119 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 5.41E-23 | |
| TrEMBL | A0A4U6THC9 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_8G198400v2 PE=4 SV=1 | 2.86E-118 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.1947, BH04.1964, CH04.2313 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0688760, gene-QOZ80_9BG0716390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0546750.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066048 |
| Poaceae | Oryza coarctata | 2 | Oco21G008410, Oco22G009640 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g39640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G207800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G015180, Chr31G007630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G126800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG006210, gene_TRIDC6BG008750 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G050800.1.cds1, TraesCS6B02G067200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115110_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43137, nbis-gene-46115 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18186, Zma_g19050 |