Basic Information
Locus ID:
CH04.2304
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein FAR1-RELATED SEQUENCE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 36267591 | 36270912 | - | CH04.2304 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 90,089.26 Da | 48.44 | 71.67 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10551 | MULE transposase domain | 324 | 418 | 1.2E-23 | IPR018289 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 124 | 202 | 3.0E-14 | IPR004330 |
| Pfam | PF04434 | SWIM zinc finger | 614 | 637 | 6.6E-6 | IPR007527 |
| SMART | SM00575 | 26again6 | 616 | 643 | 2.1E-5 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 606 | 641 | 10.509134 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38180.1 | FAR1-related sequence 5. | 2.4E-74 |
| RefSeq | XP_039817884.1 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Panicum virgatum] | 1.02E-302 |
| Q9SZL8 | Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1 | 2.35E-73 | |
| TrEMBL | A0A8T0W5W1 | Protein FAR1-RELATED SEQUENCE OS=Panicum virgatum OX=38727 GN=PVAP13_2KG348061 PE=3 SV=1 | 8.65E-301 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology