halophFGD

Basic Information

Locus ID: CH04.2284

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH04	35904423	35910836	-	CH04.2284

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.96	89,088.35 Da	51.59	67.15	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	442	482	5.23E-6	IPR036875
MobiDBLite	mobidb-lite	consensus disorder prediction	1	18	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	333	356	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	788	830	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	709	723	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	701	745	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	129	143	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	162	187	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	129	195	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	793	818	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	49	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	724	742	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_015645752.1	uncharacterized protein LOC107281538 [Oryza sativa Japonica Group]	7.39E-84
TrEMBL	A0A8T0PCJ0	CCHC-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG205801 PE=4 SV=1	6.99E-156

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	38	AH01.2411, AH01.4053, AH02.2969, AH03.2983, AH03.3482 ... AH04.2168, AH06.1173, AH08.999, AH09.537, BH03.2058, BH04.426, BH05.3451, BH05.741, BH08.1003, CH01.3769, CH01.5060, CH02.2241, CH02.2449, CH03.1722, CH03.3505, CH03.4729, CH03.8, CH04.1398, CH04.2284, CH04.622, CH05.1139, CH05.2408, CH05.2903, CH05.3274, CH05.4118, CH06.1882, CH08.2427, CH08.2782, CH08.766, CH09.130, CH09.3180, CH09.404, CH09.641
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0033440.1.CDS1 ... HORVU.MOREX.r3.4HG0412720.1.CDS1, HORVU.MOREX.r3.5HG0425570.1.CDS1, HORVU.MOREX.r3.7HG0667800.1.CDS1
Poaceae	Lolium multiflorum	11	gene-QYE76_001489, gene-QYE76_002749, gene-QYE76_005337 ... gene-QYE76_006069, gene-QYE76_015759, gene-QYE76_026176, gene-QYE76_026545, gene-QYE76_034785, gene-QYE76_039367, gene-QYE76_066465, gene-QYE76_067977
Poaceae	Oryza coarctata	11	Oco01G004580, Oco02G011290, Oco04G017380, Oco06G018880 ... Oco07G011460, Oco09G008340, Oco11G000620, Oco13G002610, Oco16G007020, Oco22G009350, Oco24G004440
Poaceae	Oryza sativa	2	LOC_Os04g10890.1, LOC_Os04g47030.1
Poaceae	Paspalum vaginatum	21	gene-BS78_01G375300, gene-BS78_02G114900, gene-BS78_K171700 ... gene-BS78_03G065900, gene-BS78_03G158000, gene-BS78_04G086200, gene-BS78_04G324700, gene-BS78_05G028000, gene-BS78_05G093400, gene-BS78_05G171000, gene-BS78_05G212100, gene-BS78_07G089300, gene-BS78_07G152400, gene-BS78_08G164700, gene-BS78_09G111900, gene-BS78_10G109100, gene-BS78_10G157000, gene-BS78_K215100, gene-BS78_K261200, gene-BS78_K284800, gene-BS78_K333900
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0100538, Pt_Chr0103384, Pt_Chr0200373, Pt_Chr0305788 ... Pt_Chr0504634, Pt_Chr0505848, Pt_Chr0602815, Pt_Chr0604111
Poaceae	Sporobolus alterniflorus	104	Chr01G021880, Chr01G022060, Chr02G016330, Chr02G017390 ... Chr02G020590, Chr02G025200, Chr03G003810, Chr03G006920, Chr03G008040, Chr03G012410, Chr03G013380, Chr04G009130, Chr04G015410, Chr05G007550, Chr05G021150, Chr05G024850, Chr05G030530, Chr06G000770, Chr06G019070, Chr06G019080, Chr06G023450, Chr06G024050, Chr06G025660, Chr06G031580, Chr07G008660, Chr07G016630, Chr07G018320, Chr07G018470, Chr07G023170, Chr08G013330, Chr08G018100, Chr09G007850, Chr09G011380, Chr0G006060, Chr10G013700, Chr10G020240, Chr11G016410, Chr11G018670, Chr11G018680, Chr12G015200, Chr12G026390, Chr12G033140, Chr13G004490, Chr13G014980, Chr13G018070, Chr14G006840, Chr14G007730, Chr14G009620, Chr15G007310, Chr15G016590, Chr15G018160, Chr16G002280, Chr16G003750, Chr16G012450, Chr16G013450, Chr17G005410, Chr17G006200, Chr17G014260, Chr18G004510, Chr18G007630, Chr20G004680, Chr20G005800, Chr20G006250, Chr20G009020, Chr21G011550, Chr21G012860, Chr22G003720, Chr22G003730, Chr22G011380, Chr22G011930, Chr22G012430, Chr23G015670, Chr23G017930, Chr23G019440, Chr24G005360, Chr24G007250, Chr24G008440, Chr25G009660, Chr25G014270, Chr25G014330, Chr25G015030, Chr26G003910, Chr27G001640, Chr27G001650, Chr27G001920, Chr27G003410, Chr27G007890, Chr28G006730, Chr28G009700, Chr29G006940, Chr29G011740, Chr29G011750, Chr30G010560, Chr30G011210, Chr30G015190, Chr30G015840, Chr30G015850, Chr31G002250, Chr31G002260, Chr31G003120, Chr31G003160, Chr31G004970, Chr31G005210, Chr31G006250
Poaceae	Triticum aestivum	2	TraesCS1D02G347600.1.cds1, TraesCS3A02G333800.1
Poaceae	Zea mays	29	Zm00001eb029240_P001, Zm00001eb050450_P001 ... Zm00001eb054780_P001, Zm00001eb059440_P001, Zm00001eb087850_P001, Zm00001eb091020_P001, Zm00001eb099660_P001, Zm00001eb107790_P001, Zm00001eb112050_P001, Zm00001eb112190_P002, Zm00001eb118380_P001, Zm00001eb118390_P001, Zm00001eb131610_P001, Zm00001eb133620_P001, Zm00001eb158410_P001, Zm00001eb195810_P002, Zm00001eb235030_P001, Zm00001eb235540_P001, Zm00001eb250840_P001, Zm00001eb261750_P001, Zm00001eb261780_P001, Zm00001eb292070_P001, Zm00001eb311130_P001, Zm00001eb324580_P001, Zm00001eb356800_P001, Zm00001eb357400_P001, Zm00001eb388420_P001, Zm00001eb408840_P001, Zm00001eb416460_P001