Basic Information
Locus ID:
CH04.2200
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 34752281 | 34773844 | + | CH04.2200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 296,180.31 Da | 50.42 | 73.57 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 570 | 622 | 1.27529E-28 | - |
| Pfam | PF12315 | Protein DA1 | 719 | 920 | 1.7E-95 | IPR022087 |
| Pfam | PF00412 | LIM domain | 570 | 625 | 2.1E-9 | IPR001781 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2257 | 2414 | 5.1E-39 | IPR013103 |
| Pfam | PF13976 | GAG-pre-integrase domain | 1846 | 1911 | 2.9E-13 | IPR025724 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 565 | 595 | 1.7E-7 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 1190 | 1230 | 1.83E-5 | IPR036875 |
| SUPERFAMILY | SSF56219 | DNase I-like | 33 | 331 | 8.06E-47 | IPR036691 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 596 | 650 | 9.76E-8 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2280 | 2481 | 7.11E-9 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 31 | 342 | 9.9E-77 | IPR036691 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 564 | 643 | 1.5E-15 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 1205 | 1259 | 5.3E-5 | - |
| SMART | SM00128 | i5p_5 | 48 | 333 | 2.8E-47 | IPR000300 |
| SMART | SM00726 | uim | 520 | 539 | 0.31 | IPR003903 |
| SMART | SM00726 | uim | 471 | 490 | 0.14 | IPR003903 |
| SMART | SM00132 | lim_4 | 569 | 621 | 1.4E-13 | IPR001781 |
| SMART | SM00726 | uim | 502 | 516 | 860.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 471 | 490 | 9.568785 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 520 | 539 | 8.630105 | IPR003903 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 1210 | 1225 | 9.273614 | IPR001878 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 568 | 628 | 12.4246 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 570 | 604 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1327 | 1350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1236 | 1271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1279 | 1294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1324 | 1350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1228 | 1303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2602 | 2616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2599 | 2628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1692 | 1708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1631 | 1711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1631 | 1652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 878 | - | - |
| Coils | Coil | Coil | 494 | 514 | - | - |
| Coils | Coil | Coil | 1351 | 1378 | - | - |
| Coils | Coil | Coil | 1390 | 1424 | - | - |
| Coils | Coil | Coil | 1506 | 1526 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 2.75E-175 |
| RefSeq | XP_034580703.1 | uncharacterized protein LOC117844031 [Setaria viridis] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 2.65E-174 | |
| TrEMBL | A0A3L6S6I3 | Protein DA1-related 1-like isoform X1 OS=Panicum miliaceum OX=4540 GN=C2845_PM02G07200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22827 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044911 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723945 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G47510.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001276m.g.v1.0, Thhalv10011683m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g34540.v2.2, Sp7g05230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g063540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1653 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1774 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0445s00008.v1.0 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026789 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G15810, Lb4G24739 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1192, CH01.1456, CH04.2200 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0225770, gene-QOZ80_3BG0270670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0341090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062969 |
| Poaceae | Oryza coarctata | 2 | Oco03G010180, Oco05G018420 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g42810.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G150200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104426 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G009890, Chr04G024550, Chr07G023280, Chr12G027050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G113600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG038510, gene_TRIDC4BG010860 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G244500.1, TraesCS4B02G070500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051200_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20383 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3239 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627952 |
| Solanaceae | Solanum chilense | 1 | SOLCI003582200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017256 |