Basic Information
Locus ID:
CH04.2199
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH04 | 34728408 | 34731562 | + | CH04.2199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 62,590.91 Da | 53.43 | 64.10 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 296 | 337 | 1.6E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 211 | 278 | 1.6E-10 | IPR002867 |
| Pfam | PF13445 | RING-type zinc-finger | 140 | 190 | 2.9E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 297 | 338 | 1.89E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 285 | 5.81E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 223 | 3.06E-15 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 274 | 534 | 3.7E-55 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 224 | 3.0E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 282 | 351 | 0.075 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 211 | 278 | 7.6E-16 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 136 | 355 | 36.652718 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 140 | 190 | 10.18781 | IPR001841 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16090.3 | - | 6.82E-139 |
| RefSeq | XP_025791588.1 | probable E3 ubiquitin-protein ligase ARI2 [Panicum hallii] | 1.41E-277 |
| Q84RR2 | Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana OX=3702 GN=ARI2 PE=2 SV=1 | 2.73E-137 | |
| TrEMBL | A0A2S3IK29 | RBR-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_9G162300 PE=3 SV=1 | 3.18E-276 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH01.1188, AH01.1189, CH01.1458, CH01.1459, CH04.2197 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225740, gene-QOZ80_3AG0225750 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0341310.1, HORVU.MOREX.r3.4HG0341330.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062996, gene-QYE76_062997 |
| Poaceae | Oryza coarctata | 3 | Oco05G017350, Oco05G018400, Oco05G018410 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g42760.1, LOC_Os03g42780.1, LOC_Os03g42790.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G150500, gene-BS78_01G150600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104418, Pt_Chr0104419 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G009910 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G115400, Tel4E01G115800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038370, gene_TRIDC4BG011020 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G243200.1, TraesCS4B02G071700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb218920_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20372, nbis-gene-20381, nbis-gene-39694 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3254, Zma_g922 |